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Sample GSM1412314 Query DataSets for GSM1412314
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 8363800026_RO6CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML63
gender: Female
age at diagnosis in years: 52.9
batch: batch2
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
8363800026_R06C02 detect.p

Data table
ID_REF VALUE 8363800026_R06C02 detect.p
cg00050873 0.505709625 0.035616035
cg00212031 0.460240964 0.228413714
cg00213748 1 0.821405188
cg00214611 0.318996416 0.065576009
cg00455876 0.496268657 0.081990526
cg01707559 0.31061714 0
cg02004872 0.251908397 0
cg02011394 0.680798005 0.251703835
cg02050847 0.221088435 0.282792358
cg02233190 0.291262136 2.98E-06
cg02494853 0.053949521 0
cg02839557 0.48540146 0.072690291
cg02842889 0.752631579 0.133142032
cg03052502 0.74702381 0.017010272
cg03155755 0.881313131 0.260315788
cg03244189 0.34516581 0
cg03443143 0.425339367 0.019149038
cg03683899 0.444805195 0.25398555
cg03695421 0.855555556 0.16188138
cg03706273 0.299546714 0

Total number of rows: 485512

Table truncated, full table size 12359 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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