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Sample GSM1412297 Query DataSets for GSM1412297
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 8363800011_RO2CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML46
gender: Female
age at diagnosis in years: 67.1
batch: batch2
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
8363800011_R02C02 detect.p

Data table
ID_REF VALUE 8363800011_R02C02 detect.p
cg00050873 0.44606414 0.000372508
cg00212031 0.565957447 0.445778924
cg00213748 0.559405941 0.088671451
cg00214611 0.815047022 0.229932349
cg00455876 0.31640625 3.73E-05
cg01707559 0.284373107 0
cg02004872 0.492671395 0
cg02011394 0.704845815 0.043841073
cg02050847 0.590062112 0.561641717
cg02233190 0.25203252 3.41E-08
cg02494853 0.011831104 0
cg02839557 0.563380282 0.159288769
cg02842889 0.548638132 0.311225984
cg03052502 0.416666667 0.131491664
cg03155755 0.523421589 0.024233871
cg03244189 0.271766482 0
cg03443143 0.601036269 0.111265855
cg03683899 0.296296296 0.222977914
cg03695421 0.233215548 3.64E-06
cg03706273 0.045767717 0

Total number of rows: 485512

Table truncated, full table size 11962 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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