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Sample GSM1412295 Query DataSets for GSM1412295
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 8363800011_RO1CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML42
gender: Female
age at diagnosis in years: 49.2
batch: batch2
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
8363800011_R01C02 detect.p

Data table
ID_REF VALUE 8363800011_R01C02 detect.p
cg00050873 0.381733021 0.053212482
cg00212031 0.399038462 0.482829801
cg00213748 0.473309609 0.285404904
cg00214611 0.421404682 0.243209073
cg00455876 0.281073446 0.000141289
cg01707559 0.260853965 0
cg02004872 0.231869254 0
cg02011394 0.296803653 0.45145649
cg02050847 0.696296296 0.604684396
cg02233190 0.094298246 5.49E-08
cg02494853 0.031926735 0
cg02839557 0.503333333 0.240967898
cg02842889 0.744525547 0.599147133
cg03052502 1 0.750000321
cg03155755 0.589247312 0.029570813
cg03244189 0.244167119 0
cg03443143 0.665236052 0.029091641
cg03683899 0.737556561 0.36257054
cg03695421 0.460410557 0.000126368
cg03706273 0.511493722 0

Total number of rows: 485512

Table truncated, full table size 12017 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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