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Sample GSM1412293 Query DataSets for GSM1412293
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 8359018137_RO6CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML40
gender: Female
age at diagnosis in years: 62.3
batch: batch2
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
8359018137_R06C01 detect.p

Data table
ID_REF VALUE 8359018137_R06C01 detect.p
cg00050873 0.308370044 0.658181378
cg00212031 0 0.94894437
cg00213748 NULL 0.992567698
cg00214611 0.528455285 0.81450943
cg00455876 0.57367387 0.180523226
cg01707559 0.316639742 2.46E-13
cg02004872 0.205567452 0
cg02011394 0.975 0.414703441
cg02050847 1 0.905672557
cg02233190 0.1447178 0.000268161
cg02494853 0.00625496 0
cg02839557 0.659340659 0.731805662
cg02842889 1 0.952101374
cg03052502 NULL 0.994436872
cg03155755 1 0.973183755
cg03244189 0.20501139 0
cg03443143 0.545 0.703319495
cg03683899 0 0.699538783
cg03695421 0.641447368 0.212325926
cg03706273 0.047508472 0

Total number of rows: 485512

Table truncated, full table size 12370 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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