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Sample GSM1412289 Query DataSets for GSM1412289
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 8359018137_RO5CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML36
gender: Female
age at diagnosis in years: 73.5
batch: batch2
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
8359018137_R05C01 detect.p

Data table
ID_REF VALUE 8359018137_R05C01 detect.p
cg00050873 0.837438424 0.256745055
cg00212031 0.988235294 0.850384394
cg00213748 1 0.653655833
cg00214611 1 0.9594371
cg00455876 0.480609418 0.010209399
cg01707559 0.284818482 0
cg02004872 0.185365854 0
cg02011394 0.707048458 0.182376119
cg02050847 0.357758621 0.439917272
cg02233190 0.162895928 0.003938921
cg02494853 0.012128835 0
cg02839557 1 0.820398777
cg02842889 0.74691358 0.600963318
cg03052502 0.275862069 0.847917933
cg03155755 1 0.972114043
cg03244189 0.250695088 0
cg03443143 0.878378378 0.863471003
cg03683899 0.32 0.681172712
cg03695421 0.394849785 0.002074629
cg03706273 0.05784927 0

Total number of rows: 485512

Table truncated, full table size 11979 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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