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Sample GSM1412280 Query DataSets for GSM1412280
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917034_RO3CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML9
gender: Female
age at diagnosis in years: 58.5
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917034_R03C02 detect.p

Data table
ID_REF VALUE 5729917034_R03C02 detect.p
cg00050873 0.135135135 0.86952557
cg00212031 0.122340426 0.69633825
cg00213748 NULL 0.986289705
cg00214611 0.216157205 0.175813102
cg00455876 0.150684932 0.482920593
cg01707559 0.189547739 0
cg02004872 0.192837466 5.88E-12
cg02011394 0.463414634 0.49359354
cg02050847 0.471544715 0.732646919
cg02233190 0.44742268 0.015629043
cg02494853 0.042146559 0
cg02839557 0.263803681 0.741418666
cg02842889 NULL 0.98496249
cg03052502 0 0.950401101
cg03155755 0.601823708 0.404820358
cg03244189 0.093184979 0
cg03443143 1 0.90605771
cg03683899 0.509259259 0.769076255
cg03695421 0.138613861 0.062646115
cg03706273 0.164916101 0

Total number of rows: 485512

Table truncated, full table size 11749 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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