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Sample GSM1412270 Query DataSets for GSM1412270
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917060_RO5CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML29
gender: Female
age at diagnosis in years: 35
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917060_R05C01 detect.p

Data table
ID_REF VALUE 5729917060_R05C01 detect.p
cg00050873 NULL 0.998093371
cg00212031 NULL 0.991167134
cg00213748 1 0.81889293
cg00214611 1 0.913213871
cg00455876 0 0.246254431
cg01707559 0.1522285 0
cg02004872 0.433646813 0
cg02011394 NULL 0.988981184
cg02050847 1 0.728633965
cg02233190 0.3 0.780297018
cg02494853 0.050877193 0
cg02839557 0 0.828092364
cg02842889 1 0.63821678
cg03052502 0 0.949995583
cg03155755 0.452054795 0.852504547
cg03244189 0.089855072 0
cg03443143 0.976501305 0.215668481
cg03683899 0 0.114890619
cg03695421 0.234752589 5.43E-09
cg03706273 0.314301362 0

Total number of rows: 485512

Table truncated, full table size 11745 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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