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Sample GSM1412262 Query DataSets for GSM1412262
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917045_RO3CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML21
gender: Female
age at diagnosis in years: 60
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917045_R03C02 detect.p

Data table
ID_REF VALUE 5729917045_R03C02 detect.p
cg00050873 0.853881279 0.309770793
cg00212031 0.410714286 0.848605754
cg00213748 0.164179104 0.823146989
cg00214611 1 0.96168124
cg00455876 0 0.000823018
cg01707559 0.183175423 0
cg02004872 0.288421053 0
cg02011394 0.32038835 0.722464814
cg02050847 0 0.783268528
cg02233190 0.272727273 0.001838251
cg02494853 0.075744681 0
cg02839557 0.090909091 0.462681968
cg02842889 0.517730496 0.495660039
cg03052502 0.14516129 0.653007513
cg03155755 0.436464088 0.444125007
cg03244189 0.105960265 0
cg03443143 0.491452991 0.262056217
cg03683899 0.370892019 0.21355159
cg03695421 0.142433234 3.14E-09
cg03706273 0.027361769 0

Total number of rows: 485512

Table truncated, full table size 11800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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