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Sample GSM1412258 Query DataSets for GSM1412258
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917045_RO6CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML18
gender: Female
age at diagnosis in years: 56
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917045_R06C01 detect.p

Data table
ID_REF VALUE 5729917045_R06C01 detect.p
cg00050873 NULL 0.985451727
cg00212031 1 0.994652119
cg00213748 1 0.860922952
cg00214611 0.971428571 0.901382218
cg00455876 0 0.977445376
cg01707559 0.098429319 0
cg02004872 0.058171745 3.14E-05
cg02011394 1 0.880412724
cg02050847 NULL 0.989917028
cg02233190 0.597122302 0.643273563
cg02494853 0.009954861 0
cg02839557 0.022556391 0.73937751
cg02842889 1 0.940480871
cg03052502 1 0.960708367
cg03155755 0.255813953 0.006948642
cg03244189 0 0.16496263
cg03443143 1 0.978487761
cg03683899 0 0.858070549
cg03695421 0 0.654390051
cg03706273 0.098587247 0

Total number of rows: 485512

Table truncated, full table size 11624 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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