GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1412257 Query DataSets for GSM1412257
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917045_RO5CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML17
gender: Female
age at diagnosis in years: 63.7
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917045_R05C01 detect.p

Data table
ID_REF VALUE 5729917045_R05C01 detect.p
cg00050873 0.952879581 0.545765556
cg00212031 1 0.951095356
cg00213748 0 0.881071235
cg00214611 1 0.853154616
cg00455876 0.010309278 0.536641451
cg01707559 0.096 0
cg02004872 0.172413793 0.158082894
cg02011394 0.663461538 0.782832796
cg02050847 NULL 0.984404336
cg02233190 0.480314961 0.016730015
cg02494853 0.00897814 0
cg02839557 0.791139241 0.64352761
cg02842889 0.956331878 0.241154233
cg03052502 1 0.914964471
cg03155755 0.442748092 0.717303653
cg03244189 0.064794816 0.001897669
cg03443143 0.569358178 0.016872194
cg03683899 0.5 0.761755991
cg03695421 0.897763578 0.06817782
cg03706273 0.025411619 0

Total number of rows: 485512

Table truncated, full table size 11781 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap