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Sample GSM1412256 Query DataSets for GSM1412256
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917045_RO4CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML16
gender: Female
age at diagnosis in years: 63
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917045_R04C01 detect.p

Data table
ID_REF VALUE 5729917045_R04C01 detect.p
cg00050873 0.595375723 0.4831873
cg00212031 0.03539823 0.678573093
cg00213748 0.29787234 0.846175432
cg00214611 1 0.820950556
cg00455876 0 0.100003356
cg01707559 0.14129979 0
cg02004872 0.11849711 0
cg02011394 1 0.962377609
cg02050847 1 0.950665359
cg02233190 0.203921569 0.060970566
cg02494853 0.009638154 0
cg02839557 0.350993377 0.556984936
cg02842889 NULL 0.956319445
cg03052502 NULL 0.996767907
cg03155755 0.490963855 0.083377507
cg03244189 0.116185897 0
cg03443143 1 0.760594216
cg03683899 0 0.421641629
cg03695421 0.278801843 0.00014265
cg03706273 0.076771654 0

Total number of rows: 485512

Table truncated, full table size 11764 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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