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Sample GSM1412254 Query DataSets for GSM1412254
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917045_RO2CO1
Sample type genomic
 
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML14
gender: Female
age at diagnosis in years: 43
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
 
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
 
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
ID_REF
VALUE Average Beta
5729917045_R02C01 detect.p

Data table
ID_REF VALUE 5729917045_R02C01 detect.p
cg00050873 0.622641509 0.821367408
cg00212031 1 0.821367408
cg00213748 0.181818182 0.579464714
cg00214611 1 0.5
cg00455876 0.293150685 7.60E-08
cg01707559 0.180048662 0
cg02004872 0.191685912 0
cg02011394 0.583815029 0.431254948
cg02050847 0.985915493 0.753337403
cg02233190 0.335555556 0.000467781
cg02494853 0.074611244 0
cg02839557 0.237623762 0.685480966
cg02842889 1 0.756650481
cg03052502 0.985 0.337506472
cg03155755 0.406451613 0.077527723
cg03244189 0.134539732 0
cg03443143 0 0.806727581
cg03683899 0.274509804 0.036597243
cg03695421 0.2775 0.002698969
cg03706273 0.309078147 0

Total number of rows: 485512

Table truncated, full table size 11795 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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