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Sample GSM1412251 Query DataSets for GSM1412251
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917034_RO5CO2
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML11
gender: Female
age at diagnosis in years: 66
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917034_R05C02 detect.p

Data table
ID_REF VALUE 5729917034_R05C02 detect.p
cg00050873 0 0.903566056
cg00212031 0.671428571 0.813254461
cg00213748 0 0.901142681
cg00214611 0.715025907 0.739466984
cg00455876 0.336666667 0.003794152
cg01707559 0.256022236 0
cg02004872 0.261682243 2.67E-08
cg02011394 0.979591837 0.804323243
cg02050847 0 0.816723069
cg02233190 0.086092715 0.765296959
cg02494853 0.038510261 0
cg02839557 0.275100402 0.215668481
cg02842889 1 0.760256348
cg03052502 NULL 0.983655704
cg03155755 0.437395659 0.103837168
cg03244189 0.09896249 6.79E-08
cg03443143 0 0.951353691
cg03683899 0 0.770278415
cg03695421 0.034858388 0.170573271
cg03706273 0.349662618 0

Total number of rows: 485512

Table truncated, full table size 11739 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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