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Sample GSM1412249 Query DataSets for GSM1412249
Status Public on Jul 31, 2014
Title genomic DNA from leukemic blast 5729917034_RO1CO1
Sample type genomic
Source name leukemic blast (MNC)
Organism Homo sapiens
Characteristics sample id: CNAML1
gender: Female
age at diagnosis in years: 51.7
batch: batch1
cell type: leukemic blast
Extracted molecule genomic DNA
Extraction protocol DNA and RNA was extracted by TRIzol ( Invitrogen) or ALLPrep ( QIAGEN ) according to the standard instructions. Sample quanlity were tested by Genomic DNA ScreenTape.
Label Cy5 and Cy35
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description leukemic blast
Data processing The raw data was processed by GenomeStudio (QIAGEN) by standard protocol.
Submission date Jun 13, 2014
Last update date Jul 31, 2014
Contact name Ying Qu
Organization name Karolinska Institute
Department Department of Medicine, Huddinge
Lab Center of Hematology and Regenerative Medicine (HERM)
Street address Hälsovagen 7
City Stockholm
State/province Stockholm
ZIP/Postal code 14157
Country Sweden
Platform ID GPL13534
Series (1)
GSE58477 Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes

Data table header descriptions
VALUE Average Beta
5729917034_R01C01 detect.p

Data table
ID_REF VALUE 5729917034_R01C01 detect.p
cg00050873 1 0.911328549
cg00212031 NULL 0.976592649
cg00213748 0.263157895 0.86952557
cg00214611 0.447368421 0.5
cg00455876 0.234642497 3.00E-06
cg01707559 0.237025147 0
cg02004872 0.300940439 0
cg02011394 0.411347518 0.696633671
cg02050847 0.023529412 0.783507964
cg02233190 0.053571429 0.349070112
cg02494853 0.014033457 0
cg02839557 1 0.696633671
cg02842889 1 0.921675264
cg03052502 1 0.445878438
cg03155755 0.481081081 0.001225639
cg03244189 0.022670025 0
cg03443143 0.462295082 0.32434706
cg03683899 0 0.693525365
cg03695421 0.234726688 9.08E-05
cg03706273 0.0670521 0

Total number of rows: 485512

Table truncated, full table size 11782 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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