|
Status |
Public on Jun 06, 2014 |
Title |
AG_43496 |
Sample type |
genomic |
|
|
Source name |
Primary brain tumor tissue
|
Organism |
Homo sapiens |
Characteristics |
1p/19q status: intact molecular classification: CIMPneg tissue: brain
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
Label |
biotin/DNP
|
Label protocol |
Illumina protocol.
|
|
|
Hybridization protocol |
Illumina protocol.
|
Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
Description |
Methylation data from anaplastic glioma tumor sample.
|
Data processing |
Bioconductor (Version 2.0) package minifi (Version 1.10) using function 'preprocessIllumina' Unmethylated and methylated signal intensities are available on series level
|
|
|
Submission date |
Jun 04, 2014 |
Last update date |
Jun 06, 2014 |
Contact name |
Martin Sill |
E-mail(s) |
m.sill@dkfz.de
|
Organization name |
DKFZ
|
Department |
Division of Pediatric Neurooncology
|
Street address |
Im Neuenheimer Feld 280
|
City |
Heidelberg |
ZIP/Postal code |
69120 |
Country |
Germany |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE58218 |
Integrated epigenetic and copy-number profiling identifies three clinically and biologically relevant groups of anaplastic glioma |
|