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Sample GSM1403988 Query DataSets for GSM1403988
Status Public on Jun 06, 2014
Title AG_43632
Sample type genomic
Source name Primary brain tumor tissue
Organism Homo sapiens
Characteristics 1p/19q status: intact
idh status: wt
molecular classification: CIMP-A
tissue: brain
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
Label biotin/DNP
Label protocol Illumina protocol.
Hybridization protocol Illumina protocol.
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description Methylation data from anaplastic glioma tumor sample.
Data processing Bioconductor (Version 2.0) package minifi (Version 1.10) using function 'preprocessIllumina'
Unmethylated and methylated signal intensities are available on series level
Submission date Jun 04, 2014
Last update date Jun 06, 2014
Contact name Martin Sill
Organization name DKFZ
Department Division of Pediatric Neurooncology
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
Platform ID GPL13534
Series (1)
GSE58218 Integrated epigenetic and copy-number profiling identifies three clinically and biologically relevant groups of anaplastic glioma

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE Detection.Pval
cg00000029 7.354000e-01 0
cg00000108 8.831278e-01 0
cg00000109 8.529246e-01 0
cg00000165 4.347769e-01 0
cg00000236 8.789429e-01 0
cg00000289 7.257987e-01 0
cg00000292 7.117159e-01 0
cg00000321 5.617932e-01 0
cg00000363 7.367582e-01 0
cg00000622 3.244199e-02 0
cg00000658 7.285967e-01 0
cg00000714 1.548967e-01 0
cg00000721 9.454480e-01 0
cg00000734 9.905353e-02 0
cg00000769 6.085667e-02 0
cg00000807 8.694061e-01 0
cg00000884 8.505215e-01 0
cg00000905 1.148235e-01 0
cg00000924 6.138682e-01 0
cg00000948 8.981743e-01 0

Total number of rows: 485577

Table truncated, full table size 12340 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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