NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1398985 Query DataSets for GSM1398985
Status Public on Apr 12, 2016
Title RSq40_1.4_beta
Sample type SRA
 
Source name pancreas_beta
Organism Homo sapiens
Characteristics tissue: pancreas
cell type: beta
age group: young
Extracted molecule total RNA
Extraction protocol ABI picopure RNA extraction kit.
Illumina HiSeq/TruSeq.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description RSq40
Data processing Raw reads were mapped to hg19 transcriptome using STAR version 2.3.0.1.
Genome_build: hg19 transcriptome, aggregated from UCSC, RefSeq and GENCODE v12 databases.
Supplementary_files_format_and_content: STAR_sorted_rpkm.txt: The processed data file contains 30 columns: the first column is transcript ID, second column is gene symbol and columns that come after are the RPKM counts of the respective samples.
 
Submission date May 27, 2014
Last update date May 15, 2019
Contact name Seung Kim
E-mail(s) seungkim@stanford.edu
Organization name Stanford University
Department Developmental Biology
Lab Seung Kim Lab
Street address 279 Campus Dr B303
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL11154
Series (2)
GSE57973 Age-dependent gene expression changes in human islets
GSE79469 Age-dependent pancreatic gene regulation reveals mechanisms governing human β-cell function
Relations
BioSample SAMN02799799
SRA SRX553361

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap