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Sample GSM1398981 Query DataSets for GSM1398981
Status Public on Apr 12, 2016
Title RSq35_5_alpha
Sample type SRA
 
Source name pancreas_alpha
Organism Homo sapiens
Characteristics tissue: pancreas
cell type: alpha
age group: young
Extracted molecule total RNA
Extraction protocol ABI picopure RNA extraction kit.
Illumina HiSeq/TruSeq.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description RSq35
Data processing Raw reads were mapped to hg19 transcriptome using STAR version 2.3.0.1.
Genome_build: hg19 transcriptome, aggregated from UCSC, RefSeq and GENCODE v12 databases.
Supplementary_files_format_and_content: STAR_sorted_rpkm.txt: The processed data file contains 30 columns: the first column is transcript ID, second column is gene symbol and columns that come after are the RPKM counts of the respective samples.
 
Submission date May 27, 2014
Last update date May 15, 2019
Contact name Seung Kim
E-mail(s) seungkim@stanford.edu
Organization name Stanford University
Department Developmental Biology
Lab Seung Kim Lab
Street address 279 Campus Dr B303
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL11154
Series (2)
GSE57973 Age-dependent gene expression changes in human islets
GSE79469 Age-dependent pancreatic gene regulation reveals mechanisms governing human β-cell function
Relations
BioSample SAMN02799796
SRA SRX553357

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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