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Status |
Public on Apr 12, 2016 |
Title |
RSq29_48_alpha |
Sample type |
SRA |
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Source name |
pancreas_alpha
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Organism |
Homo sapiens |
Characteristics |
tissue: pancreas cell type: alpha age group: old
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Extracted molecule |
total RNA |
Extraction protocol |
ABI picopure RNA extraction kit. Illumina HiSeq/TruSeq.
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
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Description |
RSq29
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Data processing |
Raw reads were mapped to hg19 transcriptome using STAR version 2.3.0.1. Genome_build: hg19 transcriptome, aggregated from UCSC, RefSeq and GENCODE v12 databases. Supplementary_files_format_and_content: STAR_sorted_rpkm.txt: The processed data file contains 30 columns: the first column is transcript ID, second column is gene symbol and columns that come after are the RPKM counts of the respective samples.
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Submission date |
May 27, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Seung Kim |
E-mail(s) |
seungkim@stanford.edu
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Organization name |
Stanford University
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Department |
Developmental Biology
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Lab |
Seung Kim Lab
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Street address |
279 Campus Dr B303
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (2) |
GSE57973 |
Age-dependent gene expression changes in human islets |
GSE79469 |
Age-dependent pancreatic gene regulation reveals mechanisms governing human β-cell function |
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Relations |
BioSample |
SAMN02799790 |
SRA |
SRX553352 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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