|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Apr 12, 2016 |
Title |
RSq10_40_beta |
Sample type |
SRA |
|
|
Source name |
pancreas_beta
|
Organism |
Homo sapiens |
Characteristics |
tissue: pancreas cell type: beta age group: old
|
Extracted molecule |
total RNA |
Extraction protocol |
ABI picopure RNA extraction kit. Illumina HiSeq/TruSeq.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
RSq10
|
Data processing |
Raw reads were mapped to hg19 transcriptome using STAR version 2.3.0.1. Genome_build: hg19 transcriptome, aggregated from UCSC, RefSeq and GENCODE v12 databases. Supplementary_files_format_and_content: STAR_sorted_rpkm.txt: The processed data file contains 30 columns: the first column is transcript ID, second column is gene symbol and columns that come after are the RPKM counts of the respective samples.
|
|
|
Submission date |
May 27, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Seung Kim |
E-mail(s) |
seungkim@stanford.edu
|
Organization name |
Stanford University
|
Department |
Developmental Biology
|
Lab |
Seung Kim Lab
|
Street address |
279 Campus Dr B303
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (2) |
GSE57973 |
Age-dependent gene expression changes in human islets |
GSE79469 |
Age-dependent pancreatic gene regulation reveals mechanisms governing human β-cell function |
|
Relations |
BioSample |
SAMN02799779 |
SRA |
SRX553341 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
|
|
|
|
|