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Sample GSM1381188 Query DataSets for GSM1381188
Status Public on May 02, 2017
Title Normal Choroid and ciliary muscle Choroid and ciliary muscle_9
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Choroid and ciliary muscle
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
Choroid and ciliary muscle_9_pval

Data table
ID_REF VALUE Choroid and ciliary muscle_9_pval
cg00050873 0.207345132059013 0.440199542534621
cg00212031 0 0.738319147643385
cg00213748 0.192536219251914 0.2650690406171
cg00214611 0.147258534912895 0.955114193154381
cg00455876 0.248754460111624 3.08141804516993e-07
cg01707559 0.348144569338214 0
cg02004872 0.0482880618169928 5.55111512312578e-16
cg02011394 0.412199028925285 0.50206985903417
cg02050847 0.0184726585708958 0.755328142648703
cg02233190 0.162460449330527 0.0555257804437933
cg02494853 0.021681243716496 0
cg02839557 0.250861831245422 0.54338138445783
cg02842889 0.167473514016958 0.744611558666155
cg03052502 0.315483232155239 0.563890331072972
cg03155755 0.387543004150205 0.184701673033295
cg03244189 0.319509076173516 0
cg03443143 0.500053099484106 0.139099590837932
cg03683899 0 0.744611558666155
cg03695421 0.22217362142513 0.00016428709733296
cg03706273 0.0275503745244145 0

Total number of rows: 485512

Table truncated, full table size 14773 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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