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Sample GSM1381180 Query DataSets for GSM1381180
Status Public on May 02, 2017
Title Normal Choroid and ciliary muscle Choroid and ciliary muscle_12
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Choroid and ciliary muscle
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
Choroid and ciliary muscle_12_pval

Data table
ID_REF VALUE Choroid and ciliary muscle_12_pval
cg00050873 0.122603954234298 0.662925924917161
cg00212031 0 0.991706939445633
cg00213748 0.298283586189912 0.396356758423462
cg00214611 0.139328978083574 0.482532670302443
cg00455876 0.14044181620636 6.57654815071629e-05
cg01707559 0.292013354479927 0
cg02004872 0.110478338789102 0
cg02011394 0.291659874219988 0.873507781854446
cg02050847 0 0.859106808118905
cg02233190 0.0535770768358345 0.0110407417722832
cg02494853 0.0228525398090559 0
cg02839557 0.206931172443829 0.612058276563096
cg02842889 0 0.975766129001518
cg03052502 0.0792617199214359 0.908481525500708
cg03155755 0.362687278325884 0.00313800214442428
cg03244189 0.284313458014008 0
cg03443143 0.277982743297264 0.183464459990194
cg03683899 0.162482577554998 0.403629063075897
cg03695421 0.0908579712833508 4.61606809509796e-06
cg03706273 0.0112993749788167 0

Total number of rows: 485512

Table truncated, full table size 14775 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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