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Sample GSM1381178 Query DataSets for GSM1381178
Status Public on May 02, 2017
Title Normal Choroid and ciliary muscle Choroid and ciliary muscle_10
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Choroid and ciliary muscle
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
Choroid and ciliary muscle_10_pval

Data table
ID_REF VALUE Choroid and ciliary muscle_10_pval
cg00050873 0.28025134507107 0.623857211964376
cg00212031 0.142531756800873 0.770151429023526
cg00213748 0.274855005190814 0.258315026931545
cg00214611 0.399919258479877 0.269621032784361
cg00455876 0.388828517588082 7.39452576947741e-09
cg01707559 0.314973354737551 0
cg02004872 0.0972411950658318 0
cg02011394 0.284658793903645 0.225930338797622
cg02050847 0 0.733980292101032
cg02233190 0.157833919781631 8.18815243528448e-05
cg02494853 0.0371948804695996 0
cg02839557 0.304508862860466 0.36146711081274
cg02842889 0.219151897597959 0.345772494160358
cg03052502 0.224044693656759 0.119790411050956
cg03155755 0.329151882553712 0.18539425123853
cg03244189 0.0624244769182007 0
cg03443143 0.282365899216326 0.163180380533575
cg03683899 0.334303750346395 0.0697134877198976
cg03695421 0.130305940205818 3.42300410238749e-10
cg03706273 0.0274725132819865 0

Total number of rows: 485512

Table truncated, full table size 14772 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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