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Sample GSM1381176 Query DataSets for GSM1381176
Status Public on May 02, 2017
Title Normal Sclera SCLERA_9
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Sclera
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.467280212318135 0.0902992555260718
cg00212031 0.130231611690087 0.75949898418396
cg00213748 0.151234020903889 0.0509311206468142
cg00214611 0.187704427190274 0.571897242883787
cg00455876 0.233624793953478 5.42457037601141e-05
cg01707559 0.210266801845428 0
cg02004872 0.101432494764782 0
cg02011394 0.254272089388789 0.497991927272829
cg02050847 0.0531429545578734 0.61200584115111
cg02233190 0.189424643392723 1.59491716700266e-06
cg02494853 0.0230380910007549 0
cg02839557 0.235971939370767 0.46390393013922
cg02842889 0 0.989790600837051
cg03052502 0.261122220214797 0.430079031826904
cg03155755 0.332929483774211 1.95800322188022e-05
cg03244189 0.193222117440756 1.77635683940025e-15
cg03443143 0.150054320832976 0.183794465474519
cg03683899 0.214508606701489 0.883153135475034
cg03695421 0.138379704219425 4.94337903944597e-12
cg03706273 0.0191825833573442 0

Total number of rows: 485512

Table truncated, full table size 14773 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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