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Sample GSM1381168 Query DataSets for GSM1381168
Status Public on May 02, 2017
Title Normal Sclera SCLERA_12
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Sclera
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.161320418052589 0.704885676043091
cg00212031 0.298198176959835 0.135934810143769
cg00213748 0.291678472697005 0.335682107641985
cg00214611 0.212951079146056 0.467485731031548
cg00455876 0.315494833255125 0.000168802760777798
cg01707559 0.31664238948249 0
cg02004872 0.143765586744952 0
cg02011394 0.201513559804278 0.282111332679088
cg02050847 0.19201102712612 0.841552088012702
cg02233190 0.18966306711344 4.70116704481827e-05
cg02494853 0.0242810437251608 0
cg02839557 0.21887606572165 0.5
cg02842889 0.156420509924992 0.169197401285654
cg03052502 0.0756052880484815 0.838907654948741
cg03155755 0.382107187519664 0.251731371397411
cg03244189 0.25609553665483 0
cg03443143 0.389954033171018 0.00607800863898567
cg03683899 0.227465802419306 0.632034034588155
cg03695421 0.101211107891117 4.42090808405737e-13
cg03706273 0.0150798802996241 0

Total number of rows: 485512

Table truncated, full table size 14781 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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