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Sample GSM1381167 Query DataSets for GSM1381167
Status Public on May 02, 2017
Title Normal Sclera SCLERA_10
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Sclera
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.717662445133745
cg00212031 0.284440711127141 0.729807226677277
cg00213748 0.416215903437125 0.210640589009109
cg00214611 0.298612123628526 0.335255054179237
cg00455876 0.0259073048167409 0.000975903705824455
cg01707559 0.292957508725 0
cg02004872 0.190546549326819 0
cg02011394 0.395687889815703 0.327725821096949
cg02050847 0.267754023475898 0.66639776360669
cg02233190 0.196010549946535 0.0106760560963024
cg02494853 0.0226139640258675 0
cg02839557 0.216767784520688 0.524822381929342
cg02842889 0.283553263610434 0.516812700314893
cg03052502 0.249075534609112 0.555704193305893
cg03155755 0.302273886329799 0.162117059455684
cg03244189 0.239675393773421 0
cg03443143 0.312987227911021 0.121526887176365
cg03683899 0.2023477786061 0.236796143398242
cg03695421 0.18024270611609 4.24435819823543e-07
cg03706273 0.0160834264928188 0

Total number of rows: 485512

Table truncated, full table size 14780 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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