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Sample GSM1381165 Query DataSets for GSM1381165
Status Public on May 02, 2017
Title Normal Retina RETINA_9
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Retina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.268845708378256 0.167421845527706
cg00212031 0.267843004265804 0.417973496817124
cg00213748 0.388175851785205 0.664943950679213
cg00214611 0.181350019917248 0.720975539079926
cg00455876 0.224178045080591 2.86968153340172e-05
cg01707559 0.325898711874054 0
cg02004872 0.045711763726293 4.15364059791479e-06
cg02011394 0.210009550350744 0.441205067032338
cg02050847 0.121136634086336 0.669128338074579
cg02233190 0.158271297686233 5.58202470912761e-06
cg02494853 0.0136095500232772 0
cg02839557 0.115740131732414 0.0612664517583066
cg02842889 0 0.8237376837241
cg03052502 0.29494674248557 0.155832115597376
cg03155755 0.368467360856464 0.00703672729080485
cg03244189 0.322574867838364 7.096545573404e-13
cg03443143 0.25197526837899 0.0315981507603318
cg03683899 0.171801465740577 0.416974711430451
cg03695421 0.0799036278982245 2.69739831875171e-05
cg03706273 0.00757871238691657 0

Total number of rows: 485512

Table truncated, full table size 14769 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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