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Sample GSM1381156 Query DataSets for GSM1381156
Status Public on May 02, 2017
Title Normal Retina RETINA_11
Sample type genomic
 
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Retina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
 
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
ID_REF
VALUE Average Beta
RETINA_11_pval

Data table
ID_REF VALUE RETINA_11_pval
cg00050873 0.3068856557599 0.0192115722824993
cg00212031 0.241310671095686 0.763203856601758
cg00213748 0.139610006718579 0.860372756982362
cg00214611 0.214331983008595 0.922765898830479
cg00455876 0.272856222733195 1.27187075801283e-05
cg01707559 0.302674128719442 0
cg02004872 0.122987857484728 0
cg02011394 0.22767264467957 0.308120779541525
cg02050847 0.0935237479927098 0.186974278336425
cg02233190 0.0509009227754047 0.00276339942946147
cg02494853 0.0190955637854285 0
cg02839557 0.178867181366208 0.425689761926541
cg02842889 0.236360029701039 0.182883508602583
cg03052502 0 0.592584436202812
cg03155755 0.301063061639523 0.616037323883262
cg03244189 0.183406909990626 0
cg03443143 0.325524447145531 0.148121537341233
cg03683899 0.229146631362355 0.217167204480595
cg03695421 0.167740343262956 0.000106938759256048
cg03706273 0.0126942200507907 0

Total number of rows: 485512

Table truncated, full table size 14759 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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