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Sample GSM1381155 Query DataSets for GSM1381155
Status Public on May 02, 2017
Title Normal Retina RETINA_10
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: normal
tissue: Retina
health state: Healthy
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.209400912422634 0.0188197808342849
cg00212031 0.321434123569146 0.88487380668466
cg00213748 0.374484713992903 0.0485998407015757
cg00214611 0.278597627015509 0.229397014372643
cg00455876 0.192296929046336 8.20270249168864e-07
cg01707559 0.276574909579774 0
cg02004872 0.166408586314513 0
cg02011394 0.40341320624984 0.464756409968426
cg02050847 0.00301902038004468 0.622461489658186
cg02233190 0.20926383210605 0.00628693516104528
cg02494853 0.0272480518601809 0
cg02839557 0.369530211159519 0.445035124018935
cg02842889 0.157290674140473 0.941581719760892
cg03052502 0 0.950275074261624
cg03155755 0.49386226106169 0.0168774576912709
cg03244189 0.218254611265548 4.68923566643298e-09
cg03443143 0.504203443670989 0.471351900044652
cg03683899 0.235304076069771 0.40996281494734
cg03695421 0.175900854321994 3.93847704271977e-06
cg03706273 0.00755783951896445 0

Total number of rows: 485512

Table truncated, full table size 14763 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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