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Sample GSM1381150 Query DataSets for GSM1381150
Status Public on May 02, 2017
Title Retinoblastoma RB_6
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.560516996729282 0.00455323618764991
cg00212031 0.143425763456818 0.342851059042197
cg00213748 0.262373038023041 0.155832115597376
cg00214611 0.512926997987461 0.253585467903158
cg00455876 0.370801654091051 0
cg01707559 0.2595846146682 0
cg02004872 0.371495654147974 0
cg02011394 0.546817571709123 5.76667269188702e-05
cg02050847 0.393059261661046 0.0163442962252784
cg02233190 0.149117219739809 3.0702305697794e-08
cg02494853 0.0134260528197162 0
cg02839557 0.300615212811012 0.0469685495026007
cg02842889 0.260856450639697 0.881071235309265
cg03052502 0.225907005600886 0.0980446253192274
cg03155755 0.37490566348747 2.02285524419921e-06
cg03244189 0.139897867407572 0
cg03443143 0.375283116558991 2.79182722817684e-06
cg03683899 0.310748178123915 0.0318088542321774
cg03695421 0.207538894454445 7.80486786311485e-14
cg03706273 0.0102794441480656 0

Total number of rows: 485512

Table truncated, full table size 14811 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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