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Sample GSM1381142 Query DataSets for GSM1381142
Status Public on May 02, 2017
Title Retinoblastoma RB_50
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.0203080943699018 0.971418602114569
cg00212031 0 0.990195278215458
cg00213748 0.103354209693052 0.64717877335074
cg00214611 0.254859910761284 0.837628155913886
cg00455876 0.119078360305193 0.000215089619632902
cg01707559 0.175298407348787 0
cg02004872 0.0937153849534047 0
cg02011394 0.302414703946023 0.521516188933522
cg02050847 0.0913623041536802 0.553653799615338
cg02233190 0.0537263245935187 0.00133739643519726
cg02494853 0.0120603277958772 0
cg02839557 0.0767330549224493 0.483859432990771
cg02842889 0.374000220546313 0.498923669778988
cg03052502 0 0.723594059221423
cg03155755 0.251780214361188 0.0149331029241605
cg03244189 0.119389597123054 0
cg03443143 0.39861311045706 0.109803617058929
cg03683899 0 0.587544480220361
cg03695421 0.0620015682619214 0.0421111062831721
cg03706273 0.0123313555591199 0

Total number of rows: 485512

Table truncated, full table size 14824 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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