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Sample GSM1381141 Query DataSets for GSM1381141
Status Public on May 02, 2017
Title Retinoblastoma RB_5
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.296241288716968 0.663325700490605
cg00212031 0.229124326245845 0.54147456944663
cg00213748 0.269361665162388 0.169237766065553
cg00214611 0.34822663606851 0.808633137661306
cg00455876 0.347588218836045 3.44479505143269e-07
cg01707559 0.286945013724473 0
cg02004872 0.129281739684518 0
cg02011394 0 0.812662073359914
cg02050847 0.0573129637331512 0.491320591853372
cg02233190 0.357580716237947 6.82565559628756e-10
cg02494853 0.0196238152513815 0
cg02839557 0 0.282543892305289
cg02842889 0.130803038033395 0.664317892358015
cg03052502 0 0.919029980428276
cg03155755 0.569121540931718 0.0138321615431344
cg03244189 0.23242454839457 0
cg03443143 0.165666290384687 0.0620925328975032
cg03683899 0.356449849777635 0.339657680183764
cg03695421 0.164324329081904 3.08963965522935e-12
cg03706273 0.00686228313362406 0

Total number of rows: 485512

Table truncated, full table size 14791 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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