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Sample GSM1381140 Query DataSets for GSM1381140
Status Public on May 02, 2017
Title Retinoblastoma RB_49
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.414081020129061 0.693525365473811
cg00212031 0 0.757592637870572
cg00213748 0.142933744443351 0.246187825842316
cg00214611 0.177572166234531 0.277535185814169
cg00455876 0.186891103098345 1.5365891159469e-07
cg01707559 0.232709786367957 0
cg02004872 0.119269788276674 0
cg02011394 0.308713712996741 0.100851503370651
cg02050847 0.0938622031373699 0.701402874505719
cg02233190 0.022569827070911 0.00204866919701063
cg02494853 0.0372716599575399 0
cg02839557 0.15396556083334 0.667710969305749
cg02842889 0.180679645559938 0.813155422040398
cg03052502 0 0.878660005697938
cg03155755 0.439817890312519 0.0015842624240382
cg03244189 0.191129514027403 0
cg03443143 0.298279990642066 0.0519743480330993
cg03683899 0 0.538079721903105
cg03695421 0.205251642290419 3.8778234711101e-06
cg03706273 0.031838978404814 0

Total number of rows: 485512

Table truncated, full table size 14789 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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