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Sample GSM1381130 Query DataSets for GSM1381130
Status Public on May 02, 2017
Title Retinoblastoma RB_4
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.331648077791049 0.054726435562788
cg00212031 0.189286624947781 0.538095461451266
cg00213748 0.202728320993603 0.136253854518248
cg00214611 0.30577428509473 0.614835188333666
cg00455876 0.212280537202388 8.66704639327365e-05
cg01707559 0.344467227613389 0
cg02004872 0.165261907348138 1.11022302462516e-15
cg02011394 0.108774173291449 0.328901255764094
cg02050847 0.205421526108278 0.367965965411845
cg02233190 0.173361936439097 0.00380323504912594
cg02494853 0.407771443662712 0
cg02839557 0.225445289020867 0.854752822087617
cg02842889 0.339034439952285 0.580177359485241
cg03052502 0.353373675210104 0.73538738152982
cg03155755 0.37738905780357 0.371766496071739
cg03244189 0.221715001420502 0
cg03443143 0.323082531075872 0.00731818083348224
cg03683899 0.164136314581818 0.0604114605711913
cg03695421 0.12010380821558 0.000413573332193495
cg03706273 0.0134791914839005 0

Total number of rows: 485512

Table truncated, full table size 14790 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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