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Sample GSM1381127 Query DataSets for GSM1381127
Status Public on May 02, 2017
Title Retinoblastoma RB_37
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.383458969931369 0.399172748580126
cg00212031 0.163968080262612 0.195324005524924
cg00213748 0.208435174980024 0.168367018414982
cg00214611 0.142092652615596 0.435057304071534
cg00455876 0.177980350600777 0
cg01707559 0.219467605302063 0
cg02004872 0.156765871162769 0
cg02011394 0.218053426637281 0.0215122394325532
cg02050847 0.0875286633115398 0.562259306575367
cg02233190 0.0623423982590425 0.000176162065994689
cg02494853 0.0215911812568666 0
cg02839557 0.116623652131622 0.0719533103740758
cg02842889 0.377204606539319 0.52851477058596
cg03052502 0.331734818873773 0.315500227332363
cg03155755 0.343415960288923 7.65620900011754e-12
cg03244189 0.247556089216786 0
cg03443143 0.493431627475136 0.0489046444275356
cg03683899 0.0272682537772868 0.224750494623677
cg03695421 0.195771922113145 1.45444335475364e-06
cg03706273 0.0140184733517045 0

Total number of rows: 485512

Table truncated, full table size 14790 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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