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Sample GSM1381125 Query DataSets for GSM1381125
Status Public on May 02, 2017
Title Retinoblastoma RB_35
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.420706977680092 0.17831540042004
cg00212031 0.212664509171924 0.294739007904389
cg00213748 0.417481878820862 0.116708995477573
cg00214611 0.43118299240131 0.209145739194206
cg00455876 0.115036138206536 2.80452328027536e-11
cg01707559 0.204661649299476 0
cg02004872 0.104381905037322 0
cg02011394 0.51168522800329 0.0172830857134754
cg02050847 0.268380836918421 0.0953078991362429
cg02233190 0.116580981144186 2.69932150239738e-05
cg02494853 0.0174757402637433 0
cg02839557 0.355941001497657 0.123457361502251
cg02842889 0.253376596733298 0.464252542700152
cg03052502 0 0.614963468944779
cg03155755 0.49252357214665 0.00315054305839579
cg03244189 0.194869466811717 0
cg03443143 0.213533358222001 0.15853559838483
cg03683899 0 0.265989844211152
cg03695421 0.1407928897745 0.000898622140443117
cg03706273 0.01574065066615 0

Total number of rows: 485512

Table truncated, full table size 14817 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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