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Sample GSM1381114 Query DataSets for GSM1381114
Status Public on May 02, 2017
Title Retinoblastoma RB_25
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.911328548863068
cg00212031 0.00688464485550242 0.765058266158397
cg00213748 0.198061771913502 0.249999679274407
cg00214611 0.388637960264347 0.793613780440888
cg00455876 0.210525982358114 7.86496273108561e-07
cg01707559 0.232415806359172 0
cg02004872 0.0591070550612326 3.26310090059678e-11
cg02011394 0.262294297993214 0.133911051002471
cg02050847 0 0.843029298091288
cg02233190 0.0657611609196809 4.86101682906082e-07
cg02494853 0.0140363745699548 0
cg02839557 0.165288409402748 0.734445119622582
cg02842889 0.223825079161204 0.740857456537059
cg03052502 0.448041310791086 0.595179641904103
cg03155755 0.441682975157938 0.00287066263457525
cg03244189 0.119028123560014 5.0762949399541e-11
cg03443143 0.158524892766985 0.096662843412654
cg03683899 0.0219209325329353 0.239553271841641
cg03695421 0.224432953832179 0.00334178310786337
cg03706273 0.00435153063092377 0

Total number of rows: 485512

Table truncated, full table size 14773 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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