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Sample GSM1381113 Query DataSets for GSM1381113
Status Public on May 02, 2017
Title Retinoblastoma RB_24
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.342792783583432 0.202073280001151
cg00212031 0.255804923158739 0.708923458409489
cg00213748 0 0.766613629426626
cg00214611 0.206006803463299 0.492919243339582
cg00455876 0.21485207168634 0.00453752013302777
cg01707559 0.310900570046106 0
cg02004872 0.286893465029258 1.11022302462516e-16
cg02011394 0.360866195392098 0.233386370573374
cg02050847 0 0.305160522248999
cg02233190 0.127935590354331 0.00169324190328091
cg02494853 0.018390469817054 0
cg02839557 0.0418010452462462 0.611793318845539
cg02842889 0.265226781310161 0.617825100089913
cg03052502 0.170703149482307 0.471699264815143
cg03155755 0.476253151812463 0.0158679798840284
cg03244189 0.281294254410487 0
cg03443143 0.0961274694858039 0.267220372554614
cg03683899 0 0.185240205811423
cg03695421 0.271985496774917 7.35577229016293e-07
cg03706273 0.116456702085418 0

Total number of rows: 485512

Table truncated, full table size 14826 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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