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Sample GSM1381106 Query DataSets for GSM1381106
Status Public on May 02, 2017
Title Retinoblastoma RB_18
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.104701667302483 0.721417210722692
cg00212031 0.254124672554353 0.847135896917793
cg00213748 0.400870495434221 0.420799294350555
cg00214611 0.270602996730703 0.69132964435888
cg00455876 0.171591589766165 1.77958208024132e-05
cg01707559 0.269716050057639 0
cg02004872 0.138290462633828 4.74078459705707e-05
cg02011394 0 0.717207642441508
cg02050847 0 0.838689302790083
cg02233190 0.0575302447760021 0.0288721264894134
cg02494853 0.00868115076163752 0
cg02839557 0.217148030150245 0.445358791250921
cg02842889 0.0969440760474506 0.952152538404713
cg03052502 0.357700959139163 0.579200705649445
cg03155755 0.635491504687531 0.0790582877213395
cg03244189 0.297966828314657 1.7989875239488e-06
cg03443143 0.297028470914966 0.135846933205437
cg03683899 0 0.626328515142297
cg03695421 0.0841980536784913 0.000339872149017206
cg03706273 0.00488696047195397 0

Total number of rows: 485512

Table truncated, full table size 14767 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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