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Sample GSM1381104 Query DataSets for GSM1381104
Status Public on May 02, 2017
Title Retinoblastoma RB_16
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.174578035944423 0.655310601227885
cg00212031 0.294364908754146 0.569408312499289
cg00213748 0.212202681363051 0.712967755253669
cg00214611 0.460446139587046 0.56449566857438
cg00455876 0.0492354343041672 0.0179342199623611
cg01707559 0.288522915085454 0
cg02004872 0.0948613967881228 2.94108071230426e-11
cg02011394 0.370160954898566 0.741995484847102
cg02050847 0.00223836637097295 0.565789467071699
cg02233190 0.164553622174165 2.28566271753827e-05
cg02494853 0.0182210832692741 0
cg02839557 0.12345130926611 0.396544324749043
cg02842889 0.14540816224522 0.658452875458508
cg03052502 0.0703526754403782 0.622580142920944
cg03155755 0.397649970762296 0.655310601227885
cg03244189 0.200116797904925 1.04200822825806e-06
cg03443143 0.220929191246176 0.646064559047487
cg03683899 0.18852676316868 0.302333366191855
cg03695421 0 0.0250921432112466
cg03706273 0.00653504619947743 0

Total number of rows: 485512

Table truncated, full table size 14798 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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