GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1381101 Query DataSets for GSM1381101
Status Public on May 02, 2017
Title Retinoblastoma RB_13
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.999666885749612
cg00212031 0 0.945694802756999
cg00213748 0.0830651295775403 0.920774272600791
cg00214611 0 0.976859069424214
cg00455876 0 0.176190801836199
cg01707559 0.293481534065274 0
cg02004872 0.215055107374814 0
cg02011394 0.101466825559364 0.972651584067025
cg02050847 0 0.998463127387373
cg02233190 0 0.271290301444168
cg02494853 0.225421164805678 0
cg02839557 0 0.922271594720116
cg02842889 0.298169127075554 0.981648288326172
cg03052502 0 0.976293603766365
cg03155755 0 0.989545395815954
cg03244189 0.125366171807001 8.07576083783346e-09
cg03443143 0 0.984067777016641
cg03683899 0 0.984033781126262
cg03695421 0.156225179105809 0.0119831061470921
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14633 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap