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Sample GSM1381098 Query DataSets for GSM1381098
Status Public on May 02, 2017
Title Retinoblastoma RB_10
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: neuroretina
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.808681086112969 0
cg00212031 0 0.820003995954354
cg00213748 0.0318487108347377 0.964967441068749
cg00214611 0 0.973612169339341
cg00455876 0.221029089919371 0.0321544833858252
cg01707559 0.223694973601653 0
cg02004872 0.0835578335321314 0
cg02011394 0.846236249315017 0
cg02050847 0 0.992412317544914
cg02233190 0 0.0158915098489256
cg02494853 0.0108305415225462 0
cg02839557 0 0.799067663112821
cg02842889 0 0.968191145767823
cg03052502 0.791691300495199 6.37893404764611e-10
cg03155755 0.715735646087967 4.35096403350599e-13
cg03244189 0.10237622954888 3.99680288865056e-15
cg03443143 0.821922626514992 0
cg03683899 0 0.976064186640814
cg03695421 0.174694485733328 0.000556985121806686
cg03706273 0.00883687555707482 0

Total number of rows: 485512

Table truncated, full table size 14723 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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