GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1381096 Query DataSets for GSM1381096
Status Public on May 02, 2017
Title Membrane from proliferative vitreoretinopathy PVR_8
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: proliferative vitreoretinopathy
tissue: eye membrane
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.309623111162771 0.0726566672368194
cg00212031 0 0.944560073352348
cg00213748 0.0410328776819446 0.719889994331178
cg00214611 0.173166534884478 0.858376439388497
cg00455876 0.0648111618040793 0.000715060666781064
cg01707559 0.331253926606901 0
cg02004872 0.148827875922409 0
cg02011394 0.471834360154532 0.093697797787113
cg02050847 0 0.939406801530813
cg02233190 0.0283017569937841 0.0557491042201377
cg02494853 0.0367907200259975 0
cg02839557 0 0.911328548863068
cg02842889 0.247869514778622 0.970677660582195
cg03052502 0 0.959728511070627
cg03155755 0.4538017345501 0.00874961699101118
cg03244189 0.136535322625085 0
cg03443143 0.544437161075025 0.5
cg03683899 0 0.831141599968913
cg03695421 0.0984689698183043 1.83614008553157e-07
cg03706273 0.071742718259951 0

Total number of rows: 485512

Table truncated, full table size 14752 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap