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Sample GSM1381095 Query DataSets for GSM1381095
Status Public on May 02, 2017
Title Membrane from proliferative vitreoretinopathy PVR_7
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: proliferative vitreoretinopathy
tissue: eye membrane
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.997007023363709
cg00212031 0 0.773484345009637
cg00213748 0.0572906306388143 0.947252462278702
cg00214611 0 0.986115204971477
cg00455876 0.246920838383077 0.000175247172867765
cg01707559 0.271294172900342 1.18016707517654e-13
cg02004872 0.0170119826502041 2.38653859376825e-05
cg02011394 0 0.948153636997008
cg02050847 0 0.995911997732218
cg02233190 0 0.987397437067677
cg02494853 0.0256401081110497 0
cg02839557 0 0.881071235309265
cg02842889 0.152667285047686 0.980166351167529
cg03052502 0 0.990670801830443
cg03155755 0.457392798700848 0.560312049982156
cg03244189 0.260837907871529 4.60962321817693e-05
cg03443143 0 0.991085460422912
cg03683899 0.31535858816236 0.903380557626297
cg03695421 0 0.419129001850577
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14809 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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