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Sample GSM1381087 Query DataSets for GSM1381087
Status Public on May 02, 2017
Title Uveal melanoma MEL_8
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.344680096961759 0.170949748191116
cg00212031 0 0.825128901562523
cg00213748 0 0.939220491123928
cg00214611 0 0.976859069424214
cg00455876 0.240346269555101 0.0329193508953305
cg01707559 0.417519607051565 0
cg02004872 0.280087265071472 8.23314653444207e-05
cg02011394 0.188920562705381 0.769076254837512
cg02050847 0.115401664005507 0.614370619017943
cg02233190 0.282658984578081 7.59054929622138e-06
cg02494853 0.0254997004115565 0
cg02839557 0.140049195525252 0.391301669193311
cg02842889 0.524064414728372 0.504639255462376
cg03052502 0 0.998914801145251
cg03155755 0.47291809055105 0.0159322229833586
cg03244189 0.418172330575631 6.51236067783501e-05
cg03443143 0.334155249626265 0.0286616440602485
cg03683899 0.293134508849178 0.253709595876407
cg03695421 0 0.0385613097029857
cg03706273 0.010838439004687 0

Total number of rows: 485512

Table truncated, full table size 14793 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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