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Sample GSM1381084 Query DataSets for GSM1381084
Status Public on May 02, 2017
Title Uveal melanoma MEL_5
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.360571000453465 0.182669763618004
cg00212031 0.133885672298016 0.0656839834471417
cg00213748 0.574597730672739 0.0265121178564732
cg00214611 0.501762004527963 0.714979874126941
cg00455876 0.109722484177616 0.0425595452000204
cg01707559 0.320872377096392 0
cg02004872 0.0801498737627903 4.56301663120939e-14
cg02011394 0.492342567014443 0.0234073510928463
cg02050847 0 0.744611558666155
cg02233190 0.1737515735845 0.0015842624240382
cg02494853 0.0136203323140736 0
cg02839557 0.28081848936273 0.341547124541492
cg02842889 0.227222214394302 0.755328142648703
cg03052502 0.281299223615056 0.638703382639342
cg03155755 0.514559205517199 0.0679834289246608
cg03244189 0.448716040629429 4.32986979603811e-15
cg03443143 0.375782340245296 0.0337578987384872
cg03683899 0.279491666891412 0.249999679274407
cg03695421 0.268353559938758 0.0033155369506076
cg03706273 0.020476155841776 0

Total number of rows: 485512

Table truncated, full table size 14821 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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