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Sample GSM1381083 Query DataSets for GSM1381083
Status Public on May 02, 2017
Title Uveal melanoma MEL_4
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.417447021570018 0.000241068116557108
cg00212031 0.209650010176849 0.669458709845948
cg00213748 0.423209959884638 0.0383187596873042
cg00214611 0.334817644556763 0.283214989216892
cg00455876 0.215577856020138 0.000329395654426468
cg01707559 0.252790714644808 0
cg02004872 0.148503540801397 0.00700370161594677
cg02011394 0.224484133092698 0.380746483355597
cg02050847 0 0.61373512606853
cg02233190 0.0104522612794786 0.000697215152366648
cg02494853 0.016595712724841 0
cg02839557 0 0.995944047607137
cg02842889 0.351639342406529 0.474390672568823
cg03052502 0.282946391347472 0.840101193590225
cg03155755 0.479357957407755 0.324453452289576
cg03244189 0.318954457327264 9.99358818920548e-07
cg03443143 0.17932386070087 0.0584182802391081
cg03683899 0 0.936449462785978
cg03695421 0 0.38626487393147
cg03706273 0.013407300822797 0

Total number of rows: 485512

Table truncated, full table size 14803 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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