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Sample GSM1381081 Query DataSets for GSM1381081
Status Public on May 02, 2017
Title Uveal melanoma MEL_2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.388216106323195 0.083105605977428
cg00212031 0.149869153877594 0.279024460920074
cg00213748 0 0.720975539079926
cg00214611 0.028617860488822 0.807778222815031
cg00455876 0.0744776187905279 0.139462995042802
cg01707559 0.313258799672464 0
cg02004872 0.228166451077778 5.69909096581611e-08
cg02011394 0.490786589517821 0.168908654931862
cg02050847 0.16320259031996 0.439917272192221
cg02233190 0.176764931393429 0.000149211000713745
cg02494853 0.00983662739710626 0
cg02839557 0.237753148319616 0.457593406482009
cg02842889 0.421258927248541 0.1586293673066
cg03052502 0.189841042549897 0.361296617360658
cg03155755 0.373820786544044 0.471699264815143
cg03244189 0.215555067481775 8.00130333922233e-06
cg03443143 0.503595340146057 0.00430752226043152
cg03683899 0.318068386962601 0.354896975960467
cg03695421 0.0470752643672226 0.00641166723192632
cg03706273 0.0133718979417017 0

Total number of rows: 485512

Table truncated, full table size 14813 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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