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Sample GSM1381079 Query DataSets for GSM1381079
Status Public on May 02, 2017
Title Uveal melanoma MEL_15
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.44528073620807 0.0247674588938179
cg00212031 0 0.923402036787995
cg00213748 0.51993960520007 0.39060924314704
cg00214611 0.311639188966006 0.266019707898968
cg00455876 0.144997407807461 2.00376548575854e-07
cg01707559 0.249846799159855 0
cg02004872 0.125137904487471 0
cg02011394 0.199040543878324 0.231472952026109
cg02050847 0.0354263963903019 0.0170102722711652
cg02233190 0.192239780214598 9.02118754730896e-06
cg02494853 0.0163746296871131 0
cg02839557 0.0951536098055345 0.331260503284044
cg02842889 0.207756460036242 0.622919088458895
cg03052502 0.140607626404073 0.72742973272363
cg03155755 0.426977616522968 0.484175747004891
cg03244189 0.177620824926982 0
cg03443143 0.410556781808341 0.0160766319444523
cg03683899 0.0518553204838522 0.576407598713279
cg03695421 0.191042912816833 2.2732341675713e-08
cg03706273 0.0183258543050612 0

Total number of rows: 485512

Table truncated, full table size 14805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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