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Sample GSM1381078 Query DataSets for GSM1381078
Status Public on May 02, 2017
Title Uveal melanoma MEL_14
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Uveal melanoma
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date May 06, 2014
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.693525365473811
cg00212031 0 0.958291321760537
cg00213748 0.0765293598643721 0.720577743650903
cg00214611 0 0.966551586911944
cg00455876 0.042902766081837 0.0604114605711913
cg01707559 0.24155937118982 0
cg02004872 0.109312764650381 0
cg02011394 0.16754023542929 0.640474876023879
cg02050847 0 0.892708761238112
cg02233190 0 0.0159811967544389
cg02494853 0.0207016454986547 0
cg02839557 0 0.963063610578897
cg02842889 0.25325510563557 0.91347540759557
cg03052502 0.0263304959833387 0.977902191610467
cg03155755 0.462878552989197 0.202740616851791
cg03244189 0.116332990729221 0
cg03443143 0.143696959220058 0.728088375177732
cg03683899 0 0.745694146004607
cg03695421 0.0733984635351331 2.74813852038092e-05
cg03706273 0.0237421704090643 0

Total number of rows: 485512

Table truncated, full table size 14749 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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